roar
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see roar.
Identify differential APA usage from RNA-seq alignments
Bioconductor version: 3.7
Identify preferential usage of APA sites, comparing two biological conditions, starting from known alternative sites and alignments obtained from standard RNA-seq experiments.
Author: Elena Grassi
Maintainer: Elena Grassi <grassi.e at gmail.com>
Citation (from within R, enter
citation("roar")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("roar")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("roar")
Identify differential APA usage from RNA-seq alignments | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | HighThroughputSequencing, RNAseq, Sequencing, Software, Transcription |
Version | 1.16.0 |
In Bioconductor since | BioC 2.14 (R-3.1) (10 years) |
License | GPL-3 |
Depends | R (>= 3.0.1) |
Imports | methods, BiocGenerics, S4Vectors, IRanges, GenomicRanges, SummarizedExperiment, GenomicAlignments(>= 0.99.4), rtracklayer, GenomeInfoDb |
System Requirements | |
URL | https://github.com/vodkatad/roar/ |
See More
Suggests | RNAseqData.HNRNPC.bam.chr14, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | XBSeq |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | roar_1.16.0.tar.gz |
Windows Binary | roar_1.16.0.zip |
Mac OS X 10.11 (El Capitan) | roar_1.16.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/roar |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/roar |
Package Short Url | https://bioconductor.org/packages/roar/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |