rhdf5

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see rhdf5.

HDF5 interface to R


Bioconductor version: 3.7

This package provides an interface between HDF5 and R. HDF5's main features are the ability to store and access very large and/or complex datasets and a wide variety of metadata on mass storage (disk) through a completely portable file format. The rhdf5 package is thus suited for the exchange of large and/or complex datasets between R and other software package, and for letting R applications work on datasets that are larger than the available RAM.

Author: Bernd Fischer [aut], Gregoire Pau [aut], Mike Smith [aut, cre], Martin Morgan [ctb], Daniel van Twisk [ctb]

Maintainer: Mike Smith <mike.smith at embl.de>

Citation (from within R, enter citation("rhdf5")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rhdf5")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rhdf5")
rhdf5 HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Infrastructure, Software
Version 2.24.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)
License Artistic-2.0
Depends methods
Imports Rhdf5lib
System Requirements
URL
See More
Suggests bit64, BiocStyle, knitr, rmarkdown, testthat
Linking To Rhdf5lib
Enhances
Depends On Me GSCA, HDF5Array
Imports Me beachmat, biomformat, diffHic, DmelSGI, DOQTL, DropletUtils, h5vc, IONiseR, phantasus, PureCN, scater, scone
Suggests Me slalom, SummarizedExperiment, tximport
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rhdf5_2.24.0.tar.gz
Windows Binary rhdf5_2.24.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) rhdf5_2.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rhdf5
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rhdf5
Package Short Url https://bioconductor.org/packages/rhdf5/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive