phenopath
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see phenopath.
Genomic trajectories with heterogeneous genetic and environmental backgrounds
Bioconductor version: 3.7
PhenoPath infers genomic trajectories (pseudotimes) in the presence of heterogeneous genetic and environmental backgrounds and tests for interactions between them.
Author: Kieran Campbell
Maintainer: Kieran Campbell <kieranrcampbell at gmail.com>
Citation (from within R, enter
citation("phenopath")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("phenopath")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("phenopath")
Vignette Title | HTML | R Script |
Reference Manual |
Details
biocViews | Bayesian, GeneExpression, PrincipalComponent, RNASeq, SingleCell, Software |
Version | 1.4.0 |
In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
License | Apache License (== 2.0) |
Depends | |
Imports | Rcpp (>= 0.12.8), SummarizedExperiment, methods, stats, dplyr, tibble, ggplot2, tidyr |
System Requirements | |
URL |
See More
Suggests | knitr, rmarkdown, forcats, testthat, BiocStyle, SingleCellExperiment |
Linking To | Rcpp |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | splatter |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | phenopath_1.4.0.tar.gz |
Windows Binary | phenopath_1.4.0.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | phenopath_1.4.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/phenopath |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/phenopath |
Package Short Url | https://bioconductor.org/packages/phenopath/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |