netprioR
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see netprioR.
A model for network-based prioritisation of genes
Bioconductor version: 3.7
A model for semi-supervised prioritisation of genes integrating network data, phenotypes and additional prior knowledge about TP and TN gene labels from the literature or experts.
Author: Fabian Schmich
Maintainer: Fabian Schmich <fabian.schmich at bsse.ethz.ch>
citation("netprioR")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("netprioR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("netprioR")| netprioR Vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CellBasedAssays, Network, Preprocessing, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | GPL-3 |
| Depends | methods, graphics, R (>= 3.3) |
| Imports | stats, Matrix, dplyr, doParallel, foreach, parallel, sparseMVN, ggplot2, gridExtra, pROC |
| System Requirements | |
| URL | http://bioconductor.org/packages/netprioR |
See More
| Suggests | knitr, BiocStyle, pander |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | netprioR_1.6.0.tar.gz |
| Windows Binary | netprioR_1.6.0.zip |
| Mac OS X 10.11 (El Capitan) | netprioR_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/netprioR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/netprioR |
| Package Short Url | https://bioconductor.org/packages/netprioR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |