msmsEDA
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see msmsEDA.
Exploratory Data Analysis of LC-MS/MS data by spectral counts
Bioconductor version: 3.7
Exploratory data analysis to assess the quality of a set of LC-MS/MS experiments, and visualize de influence of the involved factors.
Author: Josep Gregori, Alex Sanchez, and Josep Villanueva
Maintainer: Josep Gregori <josep.gregori at gmail.com>
Citation (from within R, enter
citation("msmsEDA")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("msmsEDA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("msmsEDA")
msmsEDA: Batch effects detection in LC-MSMS experiments | R Script | |
Reference Manual |
Details
biocViews | MassSpectrometry, Proteomics, Software |
Version | 1.18.0 |
In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
License | GPL-2 |
Depends | R (>= 3.0.1), MSnbase |
Imports | MASS, gplots, RColorBrewer |
System Requirements | |
URL |
See More
Suggests | |
Linking To | |
Enhances | |
Depends On Me | msmsTests |
Imports Me | |
Suggests Me | Harman, RforProteomics |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | msmsEDA_1.18.0.tar.gz |
Windows Binary | msmsEDA_1.18.0.zip |
Mac OS X 10.11 (El Capitan) | msmsEDA_1.18.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/msmsEDA |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/msmsEDA |
Package Short Url | https://bioconductor.org/packages/msmsEDA/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |