mQTL.NMR

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see mQTL.NMR.

Metabolomic Quantitative Trait Locus Mapping for 1H NMR data


Bioconductor version: 3.7

mQTL.NMR provides a complete mQTL analysis pipeline for 1H NMR data. Distinctive features include normalisation using most-used approaches, peak alignment using RSPA approach, dimensionality reduction using SRV and binning approaches, and mQTL analysis for animal and human cohorts.

Author: Lyamine Hedjazi and Jean-Baptiste Cazier

Maintainer: Lyamine Hedjazi <mqtl at ican-institute.org>

Citation (from within R, enter citation("mQTL.NMR")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mQTL.NMR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mQTL.NMR")
Frequently Asked Questions PDF R Script
How to use the mQTL.NMR package PDF R Script
Reference Manual PDF

Details

biocViews Cheminformatics, Genetics, Metabolomics, SNP, Software
Version 1.14.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License Artistic-2.0
Depends R (>= 2.15.0)
Imports qtl, GenABEL, MASS, outliers, graphics, stats, utils
System Requirements
URL http://www.ican-institute.org/tools/
See More
Suggests BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package mQTL.NMR_1.14.0.tar.gz
Windows Binary mQTL.NMR_1.14.0.zip
Mac OS X 10.11 (El Capitan) mQTL.NMR_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/mQTL.NMR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mQTL.NMR
Package Short Url https://bioconductor.org/packages/mQTL.NMR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive