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ldblock

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see ldblock.

data structures for linkage disequilibrium measures in populations


Bioconductor version: 3.7

Define data structures for linkage disequilibrium measures in populations.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("ldblock")):

Installation

To install this package, start R (version "3.5") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ldblock")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ldblock")
LD block import and manipulation PDF R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Software
Version 1.10.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License Artistic-2.0
Depends R (>= 3.1), methods, Homo.sapiens
Imports Matrix, snpStats, erma, VariantAnnotation, GenomeInfoDb, Rsamtools, GO.db, GenomicFiles(>= 1.13.6), BiocGenerics(>= 0.25.1)
System Requirements
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Suggests RUnit, BiocGenerics, knitr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me gQTLstats
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ldblock_1.10.0.tar.gz
Windows Binary ldblock_1.10.0.zip
Mac OS X 10.11 (El Capitan) ldblock_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ldblock
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ldblock
Package Short Url https://bioconductor.org/packages/ldblock/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive