gcatest
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see gcatest.
Genotype Conditional Association TEST
Bioconductor version: 3.7
GCAT is an association test for genome wide association studies that controls for population structure under a general class of trait. models.
Author: Wei Hao, Minsun Song, John D. Storey
Maintainer: Wei Hao <whao at princeton.edu>, John D. Storey <jstorey at princeton.edu>
citation("gcatest")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gcatest")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gcatest")
gcat Package | R Script | |
Reference Manual |
Details
biocViews | DimensionReduction, GenomeWideAssociation, PrincipalComponent, SNP, Software |
Version | 1.10.0 |
In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
License | GPL-3 |
Depends | R (>= 3.2) |
Imports | lfa |
System Requirements | |
URL | https://github.com/StoreyLab/gcatest |
Bug Reports | https://github.com/StoreyLab/gcatest/issues |
See More
Suggests | knitr, ggplot2 |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | gcatest_1.10.0.tar.gz |
Windows Binary | gcatest_1.10.0.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | gcatest_1.10.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/gcatest |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gcatest |
Package Short Url | https://bioconductor.org/packages/gcatest/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |