flowAI
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see flowAI.
Automatic and interactive quality control for flow cytometry data
Bioconductor version: 3.7
The package is able to perform an automatic or interactive quality control on FCS data acquired using flow cytometry instruments. By evaluating three different properties: 1) flow rate, 2) signal acquisition, 3) dynamic range, the quality control enables the detection and removal of anomalies.
Author: Gianni Monaco, Hao Chen
Maintainer: Gianni Monaco <gianni.monaco at unibas.ch>
citation("flowAI")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("flowAI")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("flowAI")
Automatic and GUI methods to do quality control on Flow cytometry Data | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | BiomedicalInformatics, FlowCytometry, QualityControl, Software |
Version | 1.10.1 |
In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
License | GPL (>= 2) |
Depends | R (>= 3.4) |
Imports | ggplot2, flowCore, plyr, changepoint, knitr, reshape2, RColorBrewer, scales, methods, graphics, stats, utils, rmarkdown |
System Requirements | |
URL |
See More
Suggests | testthat, shiny |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | flowAI_1.10.1.tar.gz |
Windows Binary | flowAI_1.10.1.zip |
Mac OS X 10.11 (El Capitan) | flowAI_1.10.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/flowAI |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/flowAI |
Bioc Package Browser | https://code.bioconductor.org/browse/flowAI/ |
Package Short Url | https://bioconductor.org/packages/flowAI/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |