farms

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see farms.

FARMS - Factor Analysis for Robust Microarray Summarization


Bioconductor version: 3.7

The package provides the summarization algorithm called Factor Analysis for Robust Microarray Summarization (FARMS) and a novel unsupervised feature selection criterion called "I/NI-calls"

Author: Djork-Arne Clevert <okko at clevert.de>

Maintainer: Djork-Arne Clevert <okko at clevert.de>

Citation (from within R, enter citation("farms")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("farms")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("farms")
Using farms PDF R Script
Reference Manual PDF

Details

biocViews GeneExpression, Microarray, Preprocessing, QualityControl, Software
Version 1.32.0
In Bioconductor since BioC 2.7 (R-2.12) (13.5 years)
License LGPL (>= 2.1)
Depends R (>= 2.8), affy(>= 1.20.0), MASS, methods
Imports affy, MASS, Biobase(>= 1.13.41), methods, graphics
System Requirements
URL http://www.bioinf.jku.at/software/farms/farms.html
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Suggests affydata, Biobase, utils
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package farms_1.32.0.tar.gz
Windows Binary farms_1.32.0.zip
Mac OS X 10.11 (El Capitan) farms_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/farms
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/farms
Package Short Url https://bioconductor.org/packages/farms/
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Old Source Packages for BioC 3.7 Source Archive