TTMap
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see TTMap.
Two-Tier Mapper: a clustering tool based on topological data analysis
Bioconductor version: 3.7
TTMap is a clustering method that groups together samples with the same deviation in comparison to a control group. It is specially useful when the data is small. It is parameter free.
Author: Rachel Jeitziner
Maintainer: Rachel Jeitziner <rachel.jeitziner at epfl.ch>
citation("TTMap")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TTMap")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TTMap")
Manual for the TTMap library | R Script | |
Reference Manual |
Details
biocViews | Classification, Clustering, DifferentialExpression, Microarray, MultipleComparison, Software |
Version | 1.2.0 |
In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
License | GPL-2 |
Depends | rgl, colorRamps |
Imports | grDevices, graphics, stats, utils, methods, SummarizedExperiment, Biobase |
System Requirements | |
URL |
See More
Suggests | BiocStyle, airway |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | TTMap_1.2.0.tar.gz |
Windows Binary | TTMap_1.2.0.zip |
Mac OS X 10.11 (El Capitan) | TTMap_1.2.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/TTMap |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TTMap |
Package Short Url | https://bioconductor.org/packages/TTMap/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |