TSCAN
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see TSCAN.
TSCAN: Tools for Single-Cell ANalysis
Bioconductor version: 3.7
TSCAN enables users to easily construct and tune pseudotemporal cell ordering as well as analyzing differentially expressed genes. TSCAN comes with a user-friendly GUI written in shiny. More features will come in the future.
Author: Zhicheng Ji, Hongkai Ji
Maintainer: Zhicheng Ji <zji4 at jhu.edu>
citation("TSCAN")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TSCAN")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TSCAN")| TSCAN: Tools for Single-Cell ANalysis | R Script | |
| Reference Manual |
Details
| biocViews | GUI, GeneExpression, Software, Visualization |
| Version | 1.18.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
| License | GPL(>=2) |
| Depends | R (>= 2.10.0) |
| Imports | ggplot2, shiny, plyr, grid, fastICA, igraph, combinat, mgcv, mclust, gplots |
| System Requirements | |
| URL |
See More
| Suggests | knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TSCAN_1.18.0.tar.gz |
| Windows Binary | TSCAN_1.18.0.zip |
| Mac OS X 10.11 (El Capitan) | TSCAN_1.18.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TSCAN |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TSCAN |
| Package Short Url | https://bioconductor.org/packages/TSCAN/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |