TFutils

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see TFutils.

TFutils


Bioconductor version: 3.7

Package to work with TF data.

Author: Vincent Carey [aut], Shweta Gopaulakrishnan [cre, aut]

Maintainer: Shweta Gopaulakrishnan <reshg at channing.harvard.edu>

Citation (from within R, enter citation("TFutils")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TFutils")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TFutils")
TFutils -- representing TFBS and TF target sets HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Software, Transcriptomics
Version 1.0.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports methods, GenomicRanges, IRanges, S4Vectors, GSEABase, shiny, miniUI, data.table, dplyr, magrittr, AnnotationDbi, Rsamtools, GenomeInfoDb, GenomicFiles, AnnotationFilter, GenomicFeatures, Gviz, utils, stats, Biobase
System Requirements
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Suggests knitr, DT, Homo.sapiens, GO.db, org.Hs.eg.db, ensembldb, EnsDb.Hsapiens.v75, testthat, BiocParallel, BiocStyle, SummarizedExperiment, UpSetR, ggplot2
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TFutils_1.0.0.tar.gz
Windows Binary TFutils_1.0.0.zip
Mac OS X 10.11 (El Capitan) TFutils_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TFutils
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TFutils
Package Short Url https://bioconductor.org/packages/TFutils/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive