SpacePAC
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see SpacePAC.
Identification of Mutational Clusters in 3D Protein Space via Simulation.
Bioconductor version: 3.7
Identifies clustering of somatic mutations in proteins via a simulation approach while considering the protein's tertiary structure.
Author: Gregory Ryslik, Hongyu Zhao
Maintainer: Gregory Ryslik <gregory.ryslik at yale.edu>
Citation (from within R, enter
citation("SpacePAC")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SpacePAC")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SpacePAC")
SpacePAC: Identifying mutational clusters in 3D protein space using simulation | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Clustering, Proteomics, Software |
Version | 1.18.3 |
In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
License | GPL-2 |
Depends | R (>= 2.15), iPAC |
Imports | |
System Requirements | |
URL |
See More
Suggests | RUnit, BiocGenerics, rgl |
Linking To | |
Enhances | |
Depends On Me | QuartPAC |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | SpacePAC_1.18.3.tar.gz |
Windows Binary | SpacePAC_1.18.3.zip |
Mac OS X 10.11 (El Capitan) | SpacePAC_1.18.3.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/SpacePAC |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SpacePAC |
Bioc Package Browser | https://code.bioconductor.org/browse/SpacePAC/ |
Package Short Url | https://bioconductor.org/packages/SpacePAC/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |