SeqVarTools
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see SeqVarTools.
Tools for variant data
Bioconductor version: 3.7
An interface to the fast-access storage format for VCF data provided in SeqArray, with tools for common operations and analysis.
Author: Stephanie M. Gogarten, Xiuwen Zheng, Adrienne Stilp
Maintainer: Stephanie M. Gogarten <sdmorris at uw.edu>
Citation (from within R, enter
citation("SeqVarTools")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SeqVarTools")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SeqVarTools")
Introduction to SeqVarTools | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | GeneticVariability, Genetics, SNP, Sequencing, Software |
Version | 1.18.0 |
In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
License | GPL-3 |
Depends | SeqArray |
Imports | grDevices, graphics, stats, methods, Biobase, gdsfmt, GenomicRanges, IRanges, S4Vectors, GWASExactHW, logistf, Matrix, dplyr, tidyr |
System Requirements | |
URL |
See More
Suggests | BiocGenerics, BiocStyle, RUnit, stringr |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | GENESIS |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | SeqVarTools_1.18.0.tar.gz |
Windows Binary | SeqVarTools_1.18.0.zip |
Mac OS X 10.11 (El Capitan) | SeqVarTools_1.18.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/SeqVarTools |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SeqVarTools |
Package Short Url | https://bioconductor.org/packages/SeqVarTools/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |