RedeR
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see RedeR.
Interactive visualization and manipulation of nested networks
Bioconductor version: 3.7
RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of modular structures, nested networks and multiple levels of hierarchical associations.
Author: Mauro Castro, Xin Wang, Florian Markowetz
Maintainer: Mauro Castro <mauro.a.castro at gmail.com>
citation("RedeR")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RedeR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RedeR")
RedeR: hierarchical network representation | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DataRepresentation, GraphAndNetwork, Infrastructure, Network, Software, Visualization |
Version | 1.28.0 |
In Bioconductor since | BioC 2.9 (R-2.14) (12.5 years) |
License | GPL (>= 2) |
Depends | R (>= 3.3.3), methods |
Imports | igraph |
System Requirements | Java Runtime Environment (>= 6) |
URL | http://genomebiology.com/2012/13/4/R29 |
See More
Suggests | pvclust, BiocStyle, knitr, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | Fletcher2013b |
Imports Me | Mulder2012, PANR, RTN, transcriptogramer |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | RedeR_1.28.0.tar.gz |
Windows Binary | RedeR_1.28.0.zip |
Mac OS X 10.11 (El Capitan) | RedeR_1.28.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/RedeR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RedeR |
Package Short Url | https://bioconductor.org/packages/RedeR/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |