MDTS
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see MDTS.
Detection of de novo deletion in targeted sequencing trios
Bioconductor version: 3.7
A package for the detection of de novo copy number deletions in targeted sequencing of trios with high sensitivity and positive predictive value.
Author: Jack M.. Fu [aut, cre]
Maintainer: Jack M.. Fu <jmfu at jhsph.edu>
Citation (from within R, enter
citation("MDTS")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MDTS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MDTS")
Title of your vignette | HTML | R Script |
Reference Manual |
Details
biocViews | Coverage, DataImport, Sequencing, Software, StatisticalMethod, TargetedResequencing, Technology |
Version | 1.0.2 |
In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
License | Artistic-2.0 |
Depends | R (>= 3.5.0) |
Imports | GenomicAlignments, GenomicRanges, IRanges, Biostrings, DNAcopy, Rsamtools, parallel, stringr |
System Requirements | |
URL |
See More
Suggests | testthat, knitr |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | MDTS_1.0.2.tar.gz |
Windows Binary | MDTS_1.0.2.zip |
Mac OS X 10.11 (El Capitan) | MDTS_1.0.2.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/MDTS |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MDTS |
Bioc Package Browser | https://code.bioconductor.org/browse/MDTS/ |
Package Short Url | https://bioconductor.org/packages/MDTS/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |