LINC
This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see LINC.
co-expression of lincRNAs and protein-coding genes
Bioconductor version: 3.7
This package provides methods to compute co-expression networks of lincRNAs and protein-coding genes. Biological terms associated with the sets of protein-coding genes predict the biological contexts of lincRNAs according to the 'Guilty by Association' approach.
Author: Manuel Goepferich, Carl Herrmann
Maintainer: Manuel Goepferich <manuel.goepferich at gmx.de>
citation("LINC")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("LINC")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("LINC")
LINC - Co-Expression Analysis of lincRNAs | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | BiologicalQuestion, GeneExpression, GeneRegulation, Software |
Version | 1.8.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.3.1), methods, stats |
Imports | Rcpp (>= 0.11.0), DOSE, ggtree, gridExtra, ape, grid, png, Biobase, sva, reshape2, utils, grDevices, org.Hs.eg.db, clusterProfiler, ggplot2, ReactomePA |
System Requirements | |
URL |
See More
Suggests | RUnit, BiocGenerics, knitr, biomaRt |
Linking To | Rcpp |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | LINC_1.8.0.tar.gz |
Windows Binary | LINC_1.8.0.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | LINC_1.8.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/LINC |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/LINC |
Package Short Url | https://bioconductor.org/packages/LINC/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |