GraphPAC
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see GraphPAC.
Identification of Mutational Clusters in Proteins via a Graph Theoretical Approach.
Bioconductor version: 3.7
Identifies mutational clusters of amino acids in a protein while utilizing the proteins tertiary structure via a graph theoretical model.
Author: Gregory Ryslik, Hongyu Zhao
Maintainer: Gregory Ryslik <gregory.ryslik at yale.edu>
Citation (from within R, enter
citation("GraphPAC")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GraphPAC")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GraphPAC")
iPAC: identification of Protein Amino acid Mutations | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Clustering, Proteomics, Software |
Version | 1.22.1 |
In Bioconductor since | BioC 2.12 (R-3.0) (11 years) |
License | GPL-2 |
Depends | R (>= 2.15), iPAC, igraph, TSP, RMallow |
Imports | |
System Requirements | |
URL |
See More
Suggests | RUnit, BiocGenerics |
Linking To | |
Enhances | |
Depends On Me | QuartPAC |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | GraphPAC_1.22.1.tar.gz |
Windows Binary | GraphPAC_1.22.1.zip |
Mac OS X 10.11 (El Capitan) | GraphPAC_1.22.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/GraphPAC |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GraphPAC |
Bioc Package Browser | https://code.bioconductor.org/browse/GraphPAC/ |
Package Short Url | https://bioconductor.org/packages/GraphPAC/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |