GeneExpressionSignature
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see GeneExpressionSignature.
Gene Expression Signature based Similarity Metric
Bioconductor version: 3.7
This package gives the implementations of the gene expression signature and its distance to each. Gene expression signature is represented as a list of genes whose expression is correlated with a biological state of interest. And its distance is defined using a nonparametric, rank-based pattern-matching strategy based on the Kolmogorov-Smirnov statistic. Gene expression signature and its distance can be used to detect similarities among the signatures of drugs, diseases, and biological states of interest.
Author: Yang Cao
Maintainer: Yang Cao <yiluheihei at gmail.com>, Fei Li <pittacus at gmail.com>,Lu Han <hanl8910 at gmail.com>
citation("GeneExpressionSignature")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GeneExpressionSignature")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GeneExpressionSignature")
GeneExpressionSignature | R Script | |
Reference Manual |
Details
biocViews | GeneExpression, Software |
Version | 1.26.0 |
In Bioconductor since | BioC 2.9 (R-2.14) (12.5 years) |
License | GPL-2 |
Depends | R (>= 2.13), Biobase, PGSEA |
Imports | |
System Requirements | |
URL |
See More
Suggests | apcluster, GEOquery |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | GeneExpressionSignature_1.26.0.tar.gz |
Windows Binary | GeneExpressionSignature_1.26.0.zip |
Mac OS X 10.11 (El Capitan) | GeneExpressionSignature_1.26.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/GeneExpressionSignature |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GeneExpressionSignature |
Package Short Url | https://bioconductor.org/packages/GeneExpressionSignature/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |