GenRank
This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see GenRank.
Candidate gene prioritization based on convergent evidence
Bioconductor version: 3.7
Methods for ranking genes based on convergent evidence obtained from multiple independent evidence layers. This package adapts three methods that are popular for meta-analysis.
Author: Chakravarthi Kanduri
Maintainer: Chakravarthi Kanduri <chakra.kanduri at gmail.com>
citation("GenRank")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GenRank")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GenRank")| Introduction to GenRank Package | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CopyNumberVariation, GeneExpression, Genetics, Microarray, SNP, Sequencing, Software |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.2.3) |
| Imports | matrixStats, reshape2, survcomp |
| System Requirements | |
| URL | https://github.com/chakri9/GenRank |
| Bug Reports | https://github.com/chakri9/GenRank/issues |
See More
| Suggests | knitr, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GenRank_1.8.0.tar.gz |
| Windows Binary | GenRank_1.8.0.zip |
| Mac OS X 10.11 (El Capitan) | GenRank_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GenRank |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GenRank |
| Package Short Url | https://bioconductor.org/packages/GenRank/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |