GRmetrics

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see GRmetrics.

Calculate growth-rate inhibition (GR) metrics

Bioconductor version: 3.7

Functions for calculating and visualizing growth-rate inhibition (GR) metrics.

Author: Nicholas Clark

Maintainer: Nicholas Clark <nicholas.clark00 at gmail.com>, Mario Medvedovic <medvedm at ucmail.uc.edu>

Citation (from within R, enter citation("GRmetrics")):

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GRmetrics")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GRmetrics")

GRmetrics: an R package for calculation and visualization of dose-response metrics based on growth rate inhibition	HTML	R Script
Reference Manual	PDF
NEWS	Text

biocViews	CellBasedAssays, CellBiology, Software, TimeCourse, Visualization
Version	1.6.1
In Bioconductor since	BioC 3.4 (R-3.3) (7.5 years)
License	GPL-3
Depends	R (>= 3.3), SummarizedExperiment
Imports	drc, plotly, ggplot2, S4Vectors
System Requirements
URL	https://github.com/uc-bd2k/GRmetrics
Bug Reports	https://github.com/uc-bd2k/GRmetrics/issues

Follow Installation instructions to use this package in your R session.

Source Package	GRmetrics_1.6.1.tar.gz
Windows Binary	GRmetrics_1.6.1.zip
Mac OS X 10.11 (El Capitan)	GRmetrics_1.6.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GRmetrics
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GRmetrics
Bioc Package Browser	https://code.bioconductor.org/browse/GRmetrics/
Package Short Url	https://bioconductor.org/packages/GRmetrics/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.7	Source Archive