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GENIE3

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see GENIE3.

GEne Network Inference with Ensemble of trees


Bioconductor version: 3.7

This package implements the GENIE3 algorithm for inferring gene regulatory networks from expression data.

Author: Van Anh Huynh-Thu, Sara Aibar, Pierre Geurts

Maintainer: Van Anh Huynh-Thu <vahuynh at ulg.ac.be>

Citation (from within R, enter citation("GENIE3")):

Installation

To install this package, start R (version "3.5") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GENIE3")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GENIE3")
GENIE3 HTML R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DecisionTree, GeneExpression, GraphAndNetwork, Network, NetworkInference, Regression, Software, SystemsBiology
Version 1.2.1
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License GPL (>= 2)
Depends
Imports stats, reshape2
System Requirements
URL
See More
Suggests knitr, rmarkdown, foreach, doRNG, doParallel, Biobase, SummarizedExperiment, testthat, methods
Linking To
Enhances
Depends On Me
Imports Me netbenchmark
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GENIE3_1.2.1.tar.gz
Windows Binary GENIE3_1.2.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) GENIE3_1.2.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/GENIE3
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GENIE3
Package Short Url https://bioconductor.org/packages/GENIE3/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive