EBSEA

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see EBSEA.

Exon Based Strategy for Expression Analysis of genes


Bioconductor version: 3.7

Calculates differential expression of genes based on exon counts of genes obtained from RNA-seq sequencing data.

Author: Arfa Mehmood, Asta Laiho, Laura L. Elo

Maintainer: Arfa Mehmood <arfa.mehmood at utu.fi>

Citation (from within R, enter citation("EBSEA")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EBSEA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EBSEA")
EBSEA: Exon Based Strategy for Expression Analysis of genes PDF R Script
Reference Manual PDF

Details

biocViews DifferentialExpression, GeneExpression, Sequencing, Software
Version 1.8.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License GPL-2
Depends
Imports edgeR, limma, graphics, stats, plyr
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package EBSEA_1.8.0.tar.gz
Windows Binary EBSEA_1.8.0.zip
Mac OS X 10.11 (El Capitan) EBSEA_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/EBSEA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/EBSEA
Package Short Url https://bioconductor.org/packages/EBSEA/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive