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DEGseq

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see DEGseq.

Identify Differentially Expressed Genes from RNA-seq data


Bioconductor version: 3.7

DEGseq is an R package to identify differentially expressed genes from RNA-Seq data.

Author: Likun Wang <wanglk at hsc.pku.edu.cn> and Xi Wang <wang-xi05 at mails.tsinghua.edu.cn>.

Maintainer: Likun Wang <wanglk at hsc.pku.edu.cn>

Citation (from within R, enter citation("DEGseq")):

Installation

To install this package, start R (version "3.5") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DEGseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DEGseq")
DEGseq PDF R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DifferentialExpression, GeneExpression, Preprocessing, RNASeq, Software
Version 1.34.1
In Bioconductor since BioC 2.5 (R-2.10) (14.5 years)
License LGPL (>=2)
Depends R (>= 2.8.0), qvalue, methods
Imports graphics, grDevices, methods, stats, utils
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DEGseq_1.34.1.tar.gz
Windows Binary DEGseq_1.34.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) DEGseq_1.34.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/DEGseq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DEGseq
Bioc Package Browser https://code.bioconductor.org/browse/DEGseq/
Package Short Url https://bioconductor.org/packages/DEGseq/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive