BiocSklearn

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see BiocSklearn.

interface to python sklearn via Rstudio reticulate


Bioconductor version: 3.7

This package provides interfaces to selected sklearn elements, and demonstrates fault tolerant use of python modules requiring extensive iteration.

Author: Vince Carey

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("BiocSklearn")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BiocSklearn")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocSklearn")
BiocSklearn overview PDF R Script
Reference Manual PDF

Details

biocViews DimensionReduction, Infrastructure, Software, StatisticalMethod
Version 1.2.0
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License Artistic-2.0
Depends R (>= 3.5.0), reticulate, methods, SummarizedExperiment, knitr, HDF5Array
Imports BBmisc
System Requirements python (>= 2.7), sklearn, numpy, pandas, h5py
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Suggests testthat, restfulSE
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BiocSklearn_1.2.0.tar.gz
Windows Binary BiocSklearn_1.2.0.zip
Mac OS X 10.11 (El Capitan) BiocSklearn_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BiocSklearn
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BiocSklearn
Package Short Url https://bioconductor.org/packages/BiocSklearn/
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Old Source Packages for BioC 3.7 Source Archive