BEclear

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see BEclear.

Correct for batch effects in DNA methylation data


Bioconductor version: 3.7

Provides some functions to detect and correct for batch effects in DNA methylation data. The core function "BEclear" is based on latent factor models and can also be used to predict missing values in any other matrix containing real numbers.

Author: Markus Merl, Ruslan Akulenko

Maintainer: David Rasp <David.j.Rasp at gmail.com>

Citation (from within R, enter citation("BEclear")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BEclear")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BEclear")
BEclear tutorial PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews BatchEffect, DNAMethylation, Software
Version 1.12.1
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL-2
Depends snowfall, Matrix
Imports
System Requirements
URL
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Depends On Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BEclear_1.12.1.tar.gz
Windows Binary BEclear_1.12.1.zip
Mac OS X 10.11 (El Capitan) BEclear_1.12.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/BEclear
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BEclear
Bioc Package Browser https://code.bioconductor.org/browse/BEclear/
Package Short Url https://bioconductor.org/packages/BEclear/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive