Package: annotation
Version: 1.0.0
Depends: R (>= 3.3.0), VariantAnnotation, AnnotationHub,
        TxDb.Hsapiens.UCSC.hg19.knownGene,
        TxDb.Mmusculus.UCSC.mm10.ensGene, org.Hs.eg.db, org.Mm.eg.db,
        Homo.sapiens, BSgenome.Hsapiens.UCSC.hg19, biomaRt, BSgenome,
        TxDb.Athaliana.BioMart.plantsmart22
Suggests: knitr, rmarkdown
License: Artistic-2.0
MD5sum: b598db057b00666d32daca23f939d195

Package: chipseqDB
Version: 1.0.0
Depends: R (>= 3.3.0), BiocStyle, ChIPpeakAnno, Gviz, Rsamtools,
        Rsubread, TxDb.Mmusculus.UCSC.mm10.knownGene, csaw, edgeR,
        knitr, locfit, org.Mm.eg.db, rtracklayer, statmod
Suggests: knitr, rmarkdown
License: Artistic-2.0
MD5sum: 890bebdcb3343db2b44f600d0b0d2399

Package: EGSEA123
Version: 0.99.18
Depends: R (>= 3.4.0), EGSEA (>= 1.5.2), limma, edgeR, illuminaio
Suggests: knitr, rmarkdown
License: Artistic-2.0
MD5sum: 32ec1e8ed44ff5db45929eae59756f63

Package: generegulation
Version: 1.0.0
Depends: R (>= 3.3.0), BSgenome.Scerevisiae.UCSC.sacCer3, Biostrings,
        GenomicFeatures, MotifDb, S4Vectors,
        TxDb.Scerevisiae.UCSC.sacCer3.sgdGene, motifStack,
        org.Sc.sgd.db, seqLogo
Suggests: knitr, rmarkdown
License: Artistic-2.0
MD5sum: 566766c6b25f40209ded6c37de62a6fd

Package: RNAseq123
Version: 1.0.2
Depends: R (>= 3.3.0), Glimma (>= 1.1.9), limma, edgeR, Mus.musculus
Suggests: knitr, rmarkdown
License: Artistic-2.0
MD5sum: a6f08fdbe648a39a257515c2d460cd46

Package: rnaseqGene
Version: 1.0.0
Depends: R (>= 3.3.0), BiocStyle, airway, Rsamtools, GenomicFeatures,
        GenomicAlignments, BiocParallel, magrittr, DESeq2, vsn, dplyr,
        ggplot2, pheatmap, RColorBrewer, PoiClaClu, ggbeeswarm,
        genefilter, AnnotationDbi, org.Hs.eg.db, ReportingTools, Gviz,
        sva, fission,
Suggests: knitr, rmarkdown
License: Artistic-2.0
MD5sum: ac77d79ff80a42458d455a4175d3a8c1

Package: sequencing
Version: 1.0.0
Depends: R (>= 3.3.0), GenomicRanges, GenomicAlignments, Biostrings,
        Rsamtools, ShortRead, BiocParallel, rtracklayer,
        VariantAnnotation, AnnotationHub, BSgenome.Hsapiens.UCSC.hg19,
        RNAseqData.HNRNPC.bam.chr14
Suggests: knitr, rmarkdown
License: Artistic-2.0
MD5sum: 097b17f3842d49405c21d56cfcbc1896

Package: variants
Version: 1.0.0
Depends: R (>= 3.3.0), VariantAnnotation, cgdv17, org.Hs.eg.db,
        TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome.Hsapiens.UCSC.hg19,
        PolyPhen.Hsapiens.dbSNP131
Suggests: knitr, rmarkdown
License: Artistic-2.0
MD5sum: 278fa7fed4587f73d6e2b1f8f4423b85