MultiAssayExperiment
This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see MultiAssayExperiment.
Software for the Integration of Multi-omics Experiments in Bioconductor
Bioconductor version: 3.6
Multi-assay 'omics experiments on a set of samples are increasingly commonplace in biomedical research. MultiAssayExperiment implements data structures and methods for representing, manipulating, and integrating multi-assay experiments via efficient construction, subsetting, and extraction operations. These methods are implemented matching Bioconductor user experience by straightforward extending concept and design of single-assay classes such as SummarizedExperiment or ExpressionSet.
Author: Marcel Ramos [aut, cre], Levi Waldron [aut], MultiAssay SIG [ctb]
Maintainer: Marcel Ramos <marcel.ramos at roswellpark.org>
citation("MultiAssayExperiment")
):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MultiAssayExperiment")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MultiAssayExperiment")
MultiAssayExperiment_cheatsheet.pdf | |
Reference Manual | |
NEWS | Text |
Details
biocViews | DataRepresentation, Infrastructure, Software |
Version | 1.4.9 |
In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.4.0) |
Imports | methods, GenomicRanges(>= 1.25.93), BiocGenerics, SummarizedExperiment(>= 1.3.81), S4Vectors, IRanges, Biobase, reshape2, shinydashboard, shiny, stats, tidyr, utils |
System Requirements | |
URL | https://github.com/waldronlab/MultiAssayExperiment/wiki/MultiAssayExperiment-API |
Bug Reports | https://github.com/waldronlab/MultiAssayExperiment/issues |
See More
Suggests | BiocStyle, testthat, knitr, R.rsp, GenomicFiles, HDF5Array, RaggedExperiment, rmarkdown, UpSetR, survival, survminer |
Linking To | |
Enhances | |
Depends On Me | curatedTCGAData, yriMulti |
Imports Me | ELMER, GOpro |
Suggests Me | brgedata, MultiDataSet, RaggedExperiment, RTCGAToolbox |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | MultiAssayExperiment_1.4.9.tar.gz |
Windows Binary | MultiAssayExperiment_1.4.9.zip |
Mac OS X 10.11 (El Capitan) | MultiAssayExperiment_1.4.9.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/MultiAssayExperiment |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MultiAssayExperiment |
Package Short Url | https://bioconductor.org/packages/MultiAssayExperiment/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.6 | Source Archive |