- Home
- Bioconductor 3.5
- Experiment Packages
- shinyMethylData
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("shinyMethylData")
In most cases, you don't need to download the package archive at all.
shinyMethylData
|
|
|
|
Example dataset of input data for shinyMethyl
Bioconductor version: Release (3.5)
Extracted data from 369 TCGA Head and Neck Cancer DNA methylation samples. The extracted data serve as an example dataset for the package shinyMethyl. Original samples are from 450k methylation arrays, and were obtained from The Cancer Genome Atlas (TCGA). 310 samples are from tumor, 50 are matched normals and 9 are technical replicates of a control cell line.
Author: Jean-Philippe Fortin [cre, aut], Kasper Daniel Hansen [aut]
Maintainer: Jean-Philippe Fortin <jfortin at jhsph.edu>
Citation (from within R,
enter citation("shinyMethylData")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("shinyMethylData")
Documentation
| Reference Manual |
Details
| biocViews | CancerData, ExperimentData, Genome |
| Version | 0.110.0 |
| License | Artistic-2.0 |
| Depends | R (>= 3.0.0) |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | shinyMethyl |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | shinyMethylData_0.110.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/shinyMethylData |
| Package Short Url | http://bioconductor.org/packages/shinyMethylData/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
