- Home
- Bioconductor 3.5
- Experiment Packages
- pasillaBamSubset
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pasillaBamSubset")
In most cases, you don't need to download the package archive at all.
pasillaBamSubset
|
|
|
|
Subset of BAM files from "Pasilla" experiment
Bioconductor version: Release (3.5)
Subset of BAM files untreated1.bam (single-end reads) and untreated3.bam (paired-end reads) from "Pasilla" experiment (Pasilla knock-down by Brooks et al., Genome Research 2011). See the vignette in the pasilla data package for how BAM files untreated1.bam and untreated3.bam were obtained from the RNA-Seq read sequence data that is provided by NCBI Gene Expression Omnibus under accession numbers GSM461176 to GSM461181. Also contains the DNA sequence for fly chromosome 4 to which the reads can be mapped.
Author: H. Pages
Maintainer: H. Pages <hpages at fhcrc.org>
Citation (from within R,
enter citation("pasillaBamSubset")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pasillaBamSubset")
Documentation
| Reference Manual |
Details
| biocViews | DNASeqData, ExperimentData, Genome, RNASeqData |
| Version | 0.14.0 |
| License | LGPL |
| Depends | |
| Imports | |
| LinkingTo | |
| Suggests | pasilla |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | GenomicAlignments, GenomicFeatures, GenomicRanges, karyoploteR, Rsamtools, TransView |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | pasillaBamSubset_0.14.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/pasillaBamSubset |
| Package Short Url | http://bioconductor.org/packages/pasillaBamSubset/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
