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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HiCDataLymphoblast")
In most cases, you don't need to download the package archive at all.
HiCDataLymphoblast
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Human lymphoblastoid HiC data from Lieberman-Aiden et al. 2009
Bioconductor version: Release (3.5)
The HiC data from human lymphoblastoid cell line (HindIII restriction) was retrieved from the sequence read archive and two ends of the paired reads were aligned separately with bowtie.
Author: Borbala Mifsud
Maintainer: Borbala Mifsud <Borbala.Mifsud at cancer.org.uk>
Citation (from within R,
enter citation("HiCDataLymphoblast")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HiCDataLymphoblast")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HiCDataLymphoblast")
| R Script | package_vignettes.pdf | |
| Reference Manual |
Details
| biocViews | ExperimentData, Homo_sapiens_Data |
| Version | 1.12.0 |
| License | GPL-3 |
| Depends | |
| Imports | |
| LinkingTo | |
| Suggests | GOTHiC, ShortRead |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | GOTHiC |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | HiCDataLymphoblast_1.12.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/HiCDataLymphoblast |
| Package Short Url | http://bioconductor.org/packages/HiCDataLymphoblast/ |
| Package Downloads Report | Download Stats |
Documentation »
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