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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GeuvadisTranscriptExpr")
In most cases, you don't need to download the package archive at all.
GeuvadisTranscriptExpr
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Data package with transcript expression and bi-allelic genotypes from the GEUVADIS project
Bioconductor version: Release (3.5)
Provides transcript expression and bi-allelic genotypes corresponding to the chromosome 19 for CEU individuals from the GEUVADIS project, Lappalainen et al.
Author: Malgorzata Nowicka [aut, cre]
Maintainer: Malgorzata Nowicka <gosia.nowicka at uzh.ch>
Citation (from within R,
enter citation("GeuvadisTranscriptExpr")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GeuvadisTranscriptExpr")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GeuvadisTranscriptExpr")
| R Script | Preprocessing and preparation of transcript expression and genotypes from the GEUVADIS project for sQTL analysis | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | ExperimentData, ExpressionData, Genome, Homo_sapiens_Data, RNASeqData, SNPData, SequencingData |
| Version | 1.4.0 |
| License | GPL (>= 3) |
| Depends | R (>= 3.3.0) |
| Imports | |
| LinkingTo | |
| Suggests | limma, rtracklayer, GenomicRanges, Rsamtools, VariantAnnotation, tools, BiocStyle, knitr, testthat |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | DRIMSeq |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GeuvadisTranscriptExpr_1.4.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/GeuvadisTranscriptExpr |
| Package Short Url | http://bioconductor.org/packages/GeuvadisTranscriptExpr/ |
| Package Downloads Report | Download Stats |
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