require(knitr) require(markdown) knit('bioCancer.Rmd','bioCancer.md') markdownToHTML('bioCancer.md','bioCancer.html',options=c('use_xhml')) system("pandoc -s bioCancer.html -o bioCancer.pdf") ## Reduce the size of Vignette.pdf file tools::compactPDF("bioCancer.pdf", gs_quality = "ebook")