CHANGES IN VERSION 1.3.8 ------------------------ o Support for inferential replicates written by Rob Patro! Works for Salmon, Sailfish and kallisto. See details in ?tximport. CHANGES IN VERSION 1.3.6 ------------------------ o Now, 'countsFromAbundance' not ignored when txOut=TRUE. CHANGES IN VERSION 1.3.4 ------------------------ o Support for kallisto HDF5 files thanks to Andrew Parker Morgan and Ryan C Thompson o Removing 'reader' argument, leaving only 'importer' argument. In addition, read_tsv will be used by default if readr package is installed. o Messages from the importing function are captured to avoid screen clutter. CHANGES IN VERSION 0.99.0 ------------------------- o Preparing package for Bioconductor submission. CHANGES IN VERSION 0.0.19 ------------------------- o Added `summarizeToGene` which breaks out the gene-level summary step, so it can be run by users on lists of transcript-level matrices produced by `tximport` with `txOut=TRUE`. CHANGES IN VERSION 0.0.18 ========================= o Changed argument `gene2tx` to `tx2gene`. This order is more intuitive: linking transcripts to genes, and matches the `geneMap` argument of Salmon and Sailfish.