CHANGES IN VERSION 1.4.3
------------------------

o updated or fixed the following functions:

   + findDMR: updated the function to allow it to run without number of processor specification

CHANGES IN VERSION 1.4.2
------------------------

o updated or fixed the following functions:

   + meth.stats: updated the coverage object error in this function

CHANGES IN VERSION 1.4.1
------------------------

o updated or fixed the following functions:

   + pool.reads: added this new function to pool reads of replicates into a single file for each condition

CHANGES IN VERSION 1.3.3
------------------------

o updated or fixed the following functions:

   + profileDNAmetBinParallel: fixed the error when there is single minus strand in GRanges for profiling

CHANGES IN VERSION 1.3.2
------------------------

o updated or fixed the following functions:

   + meth.call: coverage is outputted now as an GRanges object
   + findDMR: coverage threshold is used even for unmethylated cytosines
   + getCposChr: fixed bug which was ignoring Cytosines at the boundary of genomic ranges on both sides

CHANGES IN VERSION 1.2.1
------------------------

o updated or fixed the following functions:

   + plotMeth: updated arguments: grl, brmeth and genomic co-ordinates; removed arguments: Datatrackname 
   + updated vignette


CHANGES IN VERSION 1.0.4
------------------------

o updated or fixed the following functions:

   + BSprepare: fixed the problem of chromosome name with numeric values
   + updated all examples with updated tabix indexed files
   + updated vignette
  

CHANGES IN VERSION 1.0.3
------------------------

o updated or fixed the following functions:

   + BSprepare: fixed the problem of unsorted files
   + BSprepare: fixed the problem of methylation files with numeric chromosome name
   + methstats: Added a new function to provide descriptive statistics of methylation data
  


CHANGES IN VERSION 1.0.2
------------------------

o updated or fixed the following functions:

   + profileDNAmetBinParallel
   + updated R version dependency information

CHANGES IN VERSION 1.0.0
------------------------
 o initial version with the following functions implemented:
   + mCsmoothing
   + findPMDs
   + plotAnnoBar
   + mapBSdata2GRanges
   + findDMR
   + consolidateDMRs
   + getCpos
   + profileDNAmetBin
   + plotMeth
   + BSprepare
   + meth.call
   + GElist-class
   + GEcollection-class
   + BSdataSet-class
   + BSdata-class