- Home
- Bioconductor 3.5
- Software Packages
- wiggleplotr
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("wiggleplotr")
In most cases, you don't need to download the package archive at all.
wiggleplotr
|
|
|
|
|
Make read coverage plots from BigWig files
Bioconductor version: Release (3.5)
Tools to visualise read coverage from sequencing experiments together with genomic annotations (genes, transcripts, peaks). Introns of long transcripts can be rescaled to a fixed length for better visualisation of exonic read coverage.
Author: Kaur Alasoo [aut, cre]
Maintainer: Kaur Alasoo <kaur.alasoo at gmail.com>
Citation (from within R,
enter citation("wiggleplotr")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("wiggleplotr")
Documentation
| HTML | R Script | Introduction to wiggleplotr |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | AlternativeSplicing, ChIPSeq, Coverage, GeneExpression, RNASeq, Sequencing, Software, Transcription, Visualization |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (0.5 years) |
| License | Apache License 2.0 |
| Depends | R (>= 3.4) |
| Imports | dplyr, ggplot2 (>= 2.2.0), GenomicRanges, rtracklayer, cowplot, assertthat, purrr, S4Vectors, IRanges, GenomeInfoDb |
| LinkingTo | |
| Suggests | knitr, rmarkdown, biomaRt, GenomicFeatures, testthat, ensembldb, EnsDb.Hsapiens.v86, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg38.knownGene, AnnotationDbi, AnnotationFilter |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | wiggleplotr_1.0.0.tar.gz |
| Windows Binary | wiggleplotr_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | wiggleplotr_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/wiggleplotr |
| Package Short Url | http://bioconductor.org/packages/wiggleplotr/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
