- Home
- Bioconductor 3.5
- Software Packages
- phenoDist
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("phenoDist")
In most cases, you don't need to download the package archive at all.
phenoDist
|
|
|
|
|
Phenotypic distance measures
Bioconductor version: Release (3.5)
PhenoDist is designed for measuring phenotypic distance in image-based high-throughput screening, in order to identify strong phenotypes and to group treatments into functional clusters.
Author: Xian Zhang, Gregoire Pau, Wolfgang Huber, Michael Boutros
Maintainer: Xian Zhang <xianzhang at gmail.com>
Citation (from within R,
enter citation("phenoDist")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("phenoDist")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("phenoDist")
| R Script | Introduction to phenoDist | |
| Reference Manual |
Details
| biocViews | CellBasedAssays, Software |
| Version | 1.24.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (6.5 years) |
| License | LGPL-2.1 |
| Depends | R (>= 2.9.0), imageHTS, e1071 |
| Imports | |
| LinkingTo | |
| Suggests | GOstats, MASS |
| SystemRequirements | |
| Enhances | |
| URL | http://www.dkfz.de/signaling http://www.embl.de/research/units/genome_biology/huber/ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | phenoDist_1.24.0.tar.gz |
| Windows Binary | phenoDist_1.24.0.zip |
| Mac OS X 10.11 (El Capitan) | phenoDist_1.24.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/phenoDist |
| Package Short Url | http://bioconductor.org/packages/phenoDist/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
