To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("msgbsR")

In most cases, you don't need to download the package archive at all.

msgbsR

msgbsR: methylation sensitive genotyping by sequencing (MS-GBS) R functions

Bioconductor version: Release (3.5)

Pipeline for the anaysis of a MS-GBS experiment.

Author: Benjamin Mayne

Maintainer: Benjamin Mayne <benjamin.mayne at adelaide.edu.au>

Citation (from within R, enter citation("msgbsR")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("msgbsR")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("msgbsR")

PDF	R Script	msgbsR_Example
PDF		Reference Manual

biocViews	DataImport, DifferentialMethylation, Epigenetics, MethylSeq, Software
Version	1.0.0
In Bioconductor since	BioC 3.5 (R-3.4) (0.5 years)
License	GPL-2
Depends	R (>= 3.4), GenomicRanges, methods
Imports	BSgenome, easyRNASeq, edgeR, GenomicAlignments, GenomicFeatures, GenomeInfoDb, ggbio, ggplot2, IRanges, parallel, plyr, Rsamtools, R.utils, stats, SummarizedExperiment, S4Vectors, utils
LinkingTo
Suggests	roxygen2, BSgenome.Rnorvegicus.UCSC.rn6
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Source Package	msgbsR_1.0.0.tar.gz
Windows Binary	msgbsR_1.0.0.zip
Mac OS X 10.11 (El Capitan)	msgbsR_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/msgbsR
Package Short Url	http://bioconductor.org/packages/msgbsR/
Package Downloads Report	Download Stats

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