To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genefilter")

In most cases, you don't need to download the package archive at all.

genefilter

genefilter: methods for filtering genes from high-throughput experiments

Bioconductor version: Release (3.5)

Some basic functions for filtering genes

Author: R. Gentleman, V. Carey, W. Huber, F. Hahne

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("genefilter")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genefilter")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("genefilter")

PDF	R Script	Additional plots for: Independent filtering increases power for detecting differentially expressed genes, Bourgon et al., PNAS (2010)
PDF	R Script	Diagnostics for independent filtering
PDF	R Script	How to find genes whose expression profile is similar to that of specified genes
PDF	R Script	Using the genefilter function to filter genes from a microarray dataset
PDF		Reference Manual
Text		NEWS

biocViews	Microarray, Software
Version	1.58.1
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 12.5 years)
License	Artistic-2.0
Depends
Imports	S4Vectors(>= 0.9.42), AnnotationDbi, annotate, Biobase, graphics, methods, stats, survival
LinkingTo
Suggests	class, hgu95av2.db, tkWidgets, ALL, ROC, DESeq, pasilla, BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me	a4Base, ampliQueso, cellHTS2, charm, CNTools, GeneMeta, Hiiragi2013, simpleaffy, SISPA, sva
Imports Me	affyQCReport, annmap, arrayQualityMetrics, Category, covRNA, DESeq, DESeq2, DEXSeq, eisa, gCMAP, GGBase, GISPA, GSRI, IHWpaper, JunctionSeq, methyAnalysis, methylumi, minfi, MLInterfaces, mogsa, pcaExplorer, PECA, phenoTest, Ringo, RNAinteractMAPK, simpleaffy, TCGAbiolinks, tilingArray, XDE
Suggests Me	AffyExpress, annotate, ArrayTools, BiocCaseStudies, BioNet, categoryCompare, clusterStab, codelink, compcodeR, curatedBladderData, curatedCRCData, curatedOvarianData, DelayedArray, factDesign, ffpe, ffpeExampleData, gageData, GenoGAM, GenomicFiles, GOstats, GSAR, GSEAlm, GSVA, logicFS, lumi, MAQCsubset, MCRestimate, npGSEA, oligo, oneChannelGUI, phyloseq, pvac, qpgraph, RforProteomics, rheumaticConditionWOLLBOLD, rtracklayer, siggenes, Single.mTEC.Transcriptomes, SSPA, topGO, XDE
Build Report

Follow Installation instructions to use this package in your R session.

Source Package	genefilter_1.58.1.tar.gz
Windows Binary	genefilter_1.58.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	genefilter_1.58.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/genefilter
Package Short Url	http://bioconductor.org/packages/genefilter/
Package Downloads Report	Download Stats

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