- Home
- Bioconductor 3.5
- Software Packages
- affxparser
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("affxparser")
In most cases, you don't need to download the package archive at all.
affxparser
|
|
|
|
|
Affymetrix File Parsing SDK
Bioconductor version: Release (3.5)
Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.
Author: Henrik Bengtsson [aut], James Bullard [aut], Robert Gentleman [ctb], Kasper Daniel Hansen [aut, cre], Jim Hester [ctb], Martin Morgan [ctb]
Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
Citation (from within R,
enter citation("affxparser")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("affxparser")
Documentation
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DataImport, Infrastructure, Microarray, OneChannel, ProprietaryPlatforms, Software |
| Version | 1.48.0 |
| In Bioconductor since | BioC 1.7 (R-2.2) (12 years) |
| License | LGPL (>= 2) |
| Depends | R (>= 2.14.0) |
| Imports | |
| LinkingTo | |
| Suggests | R.oo (>= 1.20.0), R.utils (>= 2.4.0), AffymetrixDataTestFiles |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/HenrikBengtsson/affxparser |
| BugReports | https://github.com/HenrikBengtsson/affxparser/issues |
| Depends On Me | ITALICS, pdInfoBuilder, rMAT, Starr |
| Imports Me | affyILM, cn.farms, crossmeta, EventPointer, GeneRegionScan, ITALICS, oligo, rMAT |
| Suggests Me | TIN |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | affxparser_1.48.0.tar.gz |
| Windows Binary | affxparser_1.48.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | affxparser_1.48.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/affxparser |
| Package Short Url | http://bioconductor.org/packages/affxparser/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
