To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TCseq")
In most cases, you don't need to download the package archive at all.
TCseq
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Time course sequencing data analysis
Bioconductor version: Release (3.5)
Quantitative and differential analysis of epigenomic and transcriptomic time course sequencing data, clustering analysis and visualization of temporal patterns of time course data.
Author: Mengjun Wu <minervajunjun at gmail.com>, Lei Gu <leigu at broadinstitute.org>
Maintainer: Mengjun Wu <minervajunjun at gmail.com>
Citation (from within R,
enter citation("TCseq")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TCseq")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TCseq")
| R Script | TCseq Vignette | |
| Reference Manual |
Details
| biocViews | ChIPSeq, Clustering, DifferentialExpression, Epigenetics, RNASeq, Sequencing, Software, TimeCourse, Visualization |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (0.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.4) |
| Imports | edgeR, BiocGenerics, reshape2, GenomicRanges, IRanges, SummarizedExperiment, GenomicAlignments, Rsamtools, e1071, cluster, ggplot2, grid, grDevices, stats, utils, methods, locfit |
| LinkingTo | |
| Suggests | testthat |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TCseq_1.0.0.tar.gz |
| Windows Binary | TCseq_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | TCseq_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TCseq |
| Package Short Url | http://bioconductor.org/packages/TCseq/ |
| Package Downloads Report | Download Stats |
Documentation »
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