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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RaggedExperiment")
In most cases, you don't need to download the package archive at all.
RaggedExperiment
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Representation of Sparse Experiments and Assays Across Samples
Bioconductor version: Release (3.5)
This package provides a flexible representation of copy number, mutation, and other data that fit into the ragged array schema for genomic location data. The basic representation of such data provides a rectangular flat table interface to the user with range information in the rows and samples/specimen in the columns.
Author: Martin Morgan [aut, cre], Marcel Ramos [aut]
Maintainer: Martin Morgan <martin.morgan at roswellpark.org>
Citation (from within R,
enter citation("RaggedExperiment")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RaggedExperiment")
Documentation
| HTML | R Script | RaggedExperiment |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DataRepresentation, Infrastructure, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (0.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.4.0), GenomicRanges |
| Imports | BiocGenerics, IRanges, methods, S4Vectors, stats, SummarizedExperiment |
| LinkingTo | |
| Suggests | knitr, testthat, MultiAssayExperiment |
| SystemRequirements | |
| Enhances | |
| URL | |
| BugReports | https://github.com/Bioconductor/RaggedExperiment/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | MultiAssayExperiment |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RaggedExperiment_1.0.0.tar.gz |
| Windows Binary | RaggedExperiment_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | RaggedExperiment_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RaggedExperiment |
| Package Short Url | http://bioconductor.org/packages/RaggedExperiment/ |
| Package Downloads Report | Download Stats |
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