To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GOpro")
In most cases, you don't need to download the package archive at all.
GOpro
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Find the most characteristic gene ontology terms for groups of human genes
Bioconductor version: Release (3.5)
Find the most characteristic gene ontology terms for groups of human genes. This package was created as a part of the thesis which was developed under the auspices of MI^2 Group (http://mi2.mini.pw.edu.pl/, https://github.com/geneticsMiNIng).
Author: Lidia Chrabaszcz
Maintainer: Lidia Chrabaszcz <chrabaszcz.lidia at gmail.com>
Citation (from within R,
enter citation("GOpro")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GOpro")
Documentation
| HTML | R Script | GOpro: Determine groups of genes and find their characteristic GO term |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Annotation, Clustering, GO, GeneExpression, GeneSetEnrichment, MultipleComparison, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (1 year) |
| License | GPL-3 |
| Depends | R (>= 3.4) |
| Imports | AnnotationDbi, dendextend, doParallel, foreach, parallel, org.Hs.eg.db, GO.db, Rcpp, stats, graphics, MultiAssayExperiment, IRanges, S4Vectors |
| LinkingTo | Rcpp, BH |
| Suggests | knitr, rmarkdown, RTCGA.PANCAN12, BiocStyle, testthat |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/mi2-warsaw/GOpro |
| BugReports | https://github.com/mi2-warsaw/GOpro/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GOpro_1.2.0.tar.gz |
| Windows Binary | GOpro_1.2.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | GOpro_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GOpro |
| Package Short Url | http://bioconductor.org/packages/GOpro/ |
| Package Downloads Report | Download Stats |
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