Gobbi A, Iorio F, Albanese D, Jurman G and Saez-Rodriguez J (2017). BiRewire: High-performing routines for the randomization of a bipartite graph (or a binary event matrix), undirected and directed signed graph preserving degree distribution (or marginal totals). R package version 3.8.1, https://www.bioconductor.org/packages/release/bioc/html/BiRewire.html.

Gobbi A, Iorio F, Dawson K, Wedge D, Tamborero D, Alexandrov L, Lopez-Bigas N, Garnett M, Jurman G and Saez-Rodriguez J (2014). “Fast randomization of large genomic datasets while preserving alteration counts.” BMC Bioinformatics, 30(17), pp. 617-623. doi: 10.1093/bioinformatics/btu474, http://bioinformatics.oxfordjournals.org/content/30/17/i617.full.pdf+html.

Iorio F, Bernardo-Faura M, Gobbi A, Cokelaer T, Jurman G and Saez-Rodriguez J (542). “Efficient randomization of biologicalnetworks while preserving functionalcharacterization of individual nodes.” BMC Bioinformatics, 17(1), pp. 617-623. doi: 10.1186/s12859-016-1402-1, http://dx.doi.org/10.1186/s12859-016-1402-1.