Changes in version 0.99.5                        

  - vignette updates
  - trigger build

                       Changes in version 0.99.4                        

  - getsfm() now returns a SummarizedExperiment object instead of a
    data.frame, with intensities in the assay slot and feature metadata
    in rowData.
  - Expanded vignette with "Using the Results" and "Downstream Analysis"
    sections, demonstrating the SummarizedExperiment output.
  - Added SummarizedExperiment, S4Vectors, and methods to Imports.
  - Updated Shiny app and documentation to handle SummarizedExperiment
    from getsfm().

                       Changes in version 0.99.3                        

  - Renamed getqc() to get_sfi_params() to better reflect its purpose.
    It now returns a named vector c(window, idelta) instead of an
    unnamed vector.
  - Renamed getqcdf() to get_qc_features() for clarity.
  - getmzml() now returns a data.frame with named columns (mz,
    intensity, rt) instead of a matrix.
  - get_qc_features() now sets informative row names corresponding to
    the sample injection index.
  - Detailed documentation for return values and column definitions for
    getsff, and get_qc_features.
  - Updated README installation instructions for Bioconductor.
  - Added a comprehensive testthat test suite.
  - Updated DESCRIPTION to set LazyData: false per Bioconductor
    guidelines.
  - Updated find_2d_peaks to return an object with class c("sfi_peaks",
    "data.frame"). All the related functions have been updated.

                       Changes in version 0.99.2                        

  - Recover demo data with new algorithm for getsff
  - Add find_peaks_low_res() function for low-resolution (unit mass)
    data analysis
  - Add run_app() function to launch Shiny app for SFI data analysis
  - Add interactive Shiny app with GUI for feature extraction and
    alignment
  - Update NAMESPACE to export new functions and import required
    dependencies
  - Add documentation for new functions and updated existing functions
  - Add shiny and DT packages to Imports for interactive functionality

                       Changes in version 0.99.1                        

  - Fix warning for C++ code
  - Remove sfi.Rproj from git
  - Change demo data with smaller size

                       Changes in version 0.99.0                        

  - Initial BioC submission.