Changes in version 1.6.0                        

  - Renamed gene shift function for consistency (previously
    calculateTopLoadingGeneShifts())
  - Added gene specification parameter to calculateGeneShifts()
  - Improved calculateGeneShifts() function, plot method, and color
    scheme

                        Changes in version 1.4.0                        

  - Add functionality to process SCE objects for PCA computation via the
    new processPCA() function.
  - Add functionality to downsample SCE objects for diagnostic
    functions.
  - Add new diagnostic functions (calculateTopLoadingGeneShifts(),
    compareMarkers() and calculateMMDPValue()).
  - Add graph integration diagnostic function in replacement of nearest
    neighbor diagnostic, calculateGraphIntegration().
  - Improve regressPC() function and plot method, which can now also
    regress against cell types and batches.
  - Improve normalization for plotMarkerExpression() diagnostic
    function.
  - Improve user control and options for plot methods.
  - Update vignettes to reflect all new changes.

                        Changes in version 1.0.0                        

  - Initial release of the scDiagnostics package.