Changes in version 0.99.7                        

New Features

  - Added OGRDB (AIRR Community) support with full suite of functions:
      - getOGRDB(): Download germline sets from OGRDB
      - loadOGRDB(): Load OGRDB sequences into environment
      - refreshOGRDB(): Update locally cached OGRDB sequences
      - listOGRDB(): List archived OGRDB germline set versions
      - is_ogrdb_available(): Check OGRDB service availability
  - Added export functions for popular immune repertoire analysis tools:
      - exportMiXCR(): Export sequences for MiXCR custom library
        building
      - exportTRUST4(): Export sequences for TRUST4 analysis
      - exportCellRanger(): Export sequences for 10x Cell Ranger VDJ
        reference
      - exportIgBLAST(): Export sequences for IgBLAST database creation
  - Export functions work with sequences from both IMGT and OGRDB
    sources
  - Redirected HLA-based queries to IPD-IMGT/HLA FTP site for improved
    reliability
  - Added support for additional species: cynomolgus monkey, pig, and
    dog

Documentation Improvements

  - Added package-level man page (immReferent-package)
  - Renamed getting-started vignette to immReferent and expanded content
  - Expanded caching vignette with additional guidance
  - Standardized roxygen2 documentation across all functions with proper
    formatting using \code{}, \strong{}, \itemize{}, and \url{}
  - Added comprehensive @seealso sections linking related functions
  - Improved parameter documentation with explicit type specifications
  - Added return value documentation to OGRDB functions
  - Added Bioconductor installation instructions to README and vignette

Infrastructure

  - Set up GitHub Actions CI (R-CMD-check on macOS, Windows, Ubuntu)
  - Added test coverage reporting via codecov
  - Added PR command workflows for /document and /style
  - CI now runs on main, master, and devel branches
  - Updated R version dependency from 4.2.0 to 4.5.0
  - Added spelling wordlist

Testing

  - Reorganized test suite: split monolithic test file into focused
    modules
      - test-mainIMGT.R, test-mainOGRDB.R, test-export.R
      - test-cache.R, test-dowload.R, test-utils.R
  - Added comprehensive unit tests for export, OGRDB, cache, download,
    and utility functions

Bug Fixes

  - Fixed typo in is_ogrdb_available() documentation (was incorrectly
    referencing IMGT)
  - Fixed BiocCheck findings from initial submission

                       Changes in version 0.99.0                        

  - Initial release with IMGT sequence downloading, caching, and loading