d78e5d4bfb7b395cc500293e255d3365 *CITATION
813325e41c2ae52288e39cb34f011aca *DESCRIPTION
6c3ed7e749060ccb24c155f54024ef18 *INDEX
134f61ec140e36eab1fb584b0da12bf3 *Meta/Rd.rds
50a9fa3e1aa2c47fa7bdbd6e6bb8974e *Meta/features.rds
015d8a79d25672f696bb507f0304b21c *Meta/hsearch.rds
c7767a78c5f3e4d77cab276456380ebf *Meta/links.rds
aa99472025f70caed7d2351f58548ec5 *Meta/nsInfo.rds
e24c3d9c4afabba7ca03b66fd8863b16 *Meta/package.rds
5a6f310e2075fd501da10eced6b2dc96 *Meta/vignette.rds
563313544ff8a7ca116f5194ec0f5d05 *NAMESPACE
a4fff23b4696800df6623db4395f5d14 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/VariantAnnotation
1dad8e99927279a86d7aa2566812263d *R/VariantAnnotation.rdb
5ae02a4fe60f58e34076436087975892 *R/VariantAnnotation.rdx
53b0021e1a83582c7dc87586e121c047 *doc/VariantAnnotation.R
f0718d7188ef8d41ef2896978b203e5b *doc/VariantAnnotation.Rmd
3aa0b74b55b047c5c235424f4d3c035a *doc/VariantAnnotation.html
06f80ba0d7620a0e6b4c643d41fde84f *doc/ensemblVEP.R
c0424a9efefad07f22be4677ee2c2037 *doc/ensemblVEP.Rmd
ad1ac1850e702794e18c405241c20e4d *doc/ensemblVEP.html
c76caf7b220feadca800db6d60c8a553 *doc/filterVcf.R
9437f0796f440360ce0daffdb87e7cb1 *doc/filterVcf.Rmd
85949b7e558a4d209c822c18e9e69bc7 *doc/filterVcf.html
d3a2bfb5675ccaa9eb5a3d0d04f12667 *doc/index.html
46e78a67f51161387c4c13aeefe80367 *extdata/chr22.vcf.gz
540ee7e114a2c3c9f9730610940ec47f *extdata/chr22.vcf.gz.tbi
a4ca21413e322997ed17c5429e65b9ca *extdata/chr7-sub.vcf.gz
dc5c0ecc784ff39509a164f3020b72f8 *extdata/chr7-sub.vcf.gz.tbi
b325a60a320b6aebb41d41d1dafb9c6d *extdata/ex2.vcf
277341ce20f406ab09a0c23c6bd0d86f *extdata/gl_chr1.vcf
f2a805083bd71e155f977ffb49df2cd5 *extdata/h1187-10k.vcf.gz
fab30e49f0d054d462f8e1737844b204 *extdata/h1187-10k.vcf.gz.tbi
f2a16449fa12afad25f21aceb90c1f9d *extdata/hapmap_exome_chr22.vcf.gz
4bc7a2ff10bc925d4d5801c32c644ade *extdata/hapmap_exome_chr22.vcf.gz.tbi
48852d332eb21dd639b4c6be53762357 *extdata/structural.vcf
9162fa399d789806a01bb76e28614b53 *help/AnIndex
448c569ba3b7696d5ed1ed9be585cc37 *help/VariantAnnotation.rdb
42bd2a8c8da51a21aeb8202dd09bb732 *help/VariantAnnotation.rdx
d6e1fd9ac67dc546aedd47ebbd9215f2 *help/aliases.rds
e8fd6d47f108ef04cfbc49fbf6d1df08 *help/paths.rds
48ce30e18f8d928f3e48b72f2ceb120f *html/00Index.html
ee41876c0116916bb04bcf4fe3e43d78 *html/R.css
1c0b91b99791a38abe8029c8543852c7 *libs/x64/VariantAnnotation.dll
d003f98ebd1ea1daa554e7adcc9ddf21 *libs/x64/symbols.rds
17f1c6f05e7a9ff7756b6efabce3f745 *scripts/test_Rplinkseq.R
b7a9592a5de31dd84a3f7e8d1e0332de *unitTests/cases/FORMAT_header_no_SAMPLEs.vcf
9ce56b3cbbb6829d3e3236a106046da0 *unitTests/cases/VarScan_header.vcf
0c5f14796bf4eb3683ceff8e559f43d7 *unitTests/cases/banded_gvcf.vcf
0fbb3e914d7a97208d8d1eb8fcb93026 *unitTests/cases/buffer_realloc.vcf
992d76f76b4634d6ea263b873f92cbac *unitTests/cases/ex1-seq1-90.vcf
4619ce5ed3abf69b38c13f8a72ca9755 *unitTests/cases/expand.vcf
7be3dfdcd77d28fe84fdeb30ea096d58 *unitTests/cases/fewer-FORMAT-than-GENO.vcf
dfc226165c7c64d2e24a1fe952600cdd *unitTests/cases/meta_header.vcf
3d07a0b85a80b389b0ee5ba3dba11b13 *unitTests/cases/missing-FORMAT-metadata-elt.vcf
ba4c3b28d5f63740fda11e70a19eccd7 *unitTests/cases/mixedStructural.vcf
0230db3391a4a664fd5e2236fd0e5a92 *unitTests/cases/multiple_INFO_fields.vcf
752d9d47c17d8f66791ce8804d88dbf6 *unitTests/cases/negative_FORMAT_Number.vcf
39d8ae8aa155e4bac07e9215017143e7 *unitTests/cases/no_FORMAT_column.vcf
4fc8b2f12f8b054e888ce092bb5b5443 *unitTests/cases/no_GENO_row.vcf
a99d3b281abdd928c30fd147de3848a0 *unitTests/cases/no_INFO_header.vcf
0c5bd63cfafbad13a8591b4963e0d411 *unitTests/cases/unspecified_INFO_FORMAT_fields.vcf
0b5b4448b336d5a5b56d18cf818f9712 *unitTests/test_SIFTandPolyPhen.R
d08510e74b080b9d0830a1941740ea90 *unitTests/test_ScanVcfParam-class.R
dedcdc316629cb8661cc893f6d18da0f *unitTests/test_VCF-class.R
47c754d8d3587e29614be5d6e87c4ffe *unitTests/test_VRanges-class.R
98f30f7a93c9bb3ea1605f693d02b569 *unitTests/test_expand-methods.R
ad687c9f6717a20333e98db69fe89286 *unitTests/test_filterVcf.R
7c00151d0528b740a94ddb9a8504898a *unitTests/test_genotypeToSnpMatrix.R
2c2205ed5a0c6d352887365ce90f025a *unitTests/test_isSNV.R
f5452e11ec8e916f9fc47264b717618b *unitTests/test_locateVariants-methods.R
b92e0e7b951b75b850b37d0204efa1f5 *unitTests/test_predictCoding-methods.R
5044be812d16c430cbc3a2451c10eba4 *unitTests/test_readVcf-methods.R
16a5eae70d0e330c6660e94f57fdf32f *unitTests/test_scanVcf.R
e45debe5cc9e5a797032c5ece476a74c *unitTests/test_snpSummary.R
d98bfd1bf44ccafabe740b9ae42d1208 *unitTests/test_summarizeVariants-methods.R
118c0fdfd316bc754c56babc45b3bbdf *unitTests/test_vcfFields.R
d3bb2d2fe3e1d082db457d14f0c9d7e6 *unitTests/test_writeVcf-methods.R
