smokingMouse
This is the development version of smokingMouse; for the stable release version, see smokingMouse.
Provides access to smokingMouse project data
Bioconductor version: Development (3.21)
This is an ExperimentHub package that provides access to the data generated and analyzed in the [smoking-nicotine-mouse](https://github.com/LieberInstitute/smoking-nicotine-mouse/) LIBD project. The datasets contain the expression data of mouse genes, transcripts, exons, and exon-exon junctions across 208 samples from pup and adult mouse brain, and adult blood, that were exposed to nicotine, cigarette smoke, or controls. They also contain relevant metadata of these samples and gene expression features, such QC metrics, if they were used after filtering steps and also if the features were differently expressed in the different experiments.
Author: Daianna Gonzalez-Padilla [aut, cre] (ORCID:
Maintainer: Daianna Gonzalez-Padilla <glezdaianna at gmail.com>
citation("smokingMouse")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("smokingMouse")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("smokingMouse")| Introduction to smokingMouse | HTML | R Script |
| Reference Manual |
Details
| biocViews | ExperimentData, ExperimentHub, ExpressionData, Mus_musculus_Data, RNASeqData |
| Version | 1.5.1 |
| License | Artistic-2.0 |
| Depends | |
| Imports | |
| System Requirements | |
| URL | https://github.com/LieberInstitute/smokingMouse |
| Bug Reports | https://support.bioconductor.org/tag/smokingMouse |
See More
| Suggests | AnnotationHubData, BiocStyle, ExperimentHub, ExperimentHubData, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | smokingMouse_1.5.1.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/smokingMouse |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/smokingMouse |
| Package Short Url | https://bioconductor.org/packages/smokingMouse/ |
| Package Downloads Report | Download Stats |